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16 Jun 2022
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Sensory plasticity in a socially plastic bee

Taking advantage of facultative sociality in sweat bees to study the developmental plasticity of antennal sense organs and its association with social phenotype

Recommended by based on reviews by Michael D Greenfield, Sylvia Anton and Lluís Socias-Martínez

The study of the evolution of sociality is closely associated with the study of the evolution of sensory systems. Indeed, group life and sociality necessitate that individuals recognize each other and detect outsiders, as seen in eusocial insects such as Hymenoptera. While we know that antennal sense organs that are involved in olfactory perception are found in greater densities in social species of that group compared to solitary hymenopterans, whether this among-species correlation represents the consequence of social evolution leading to sensory evolution, or the opposite, is still questioned. Knowing more about how sociality and sensory abilities covary within a species would help us understand the evolutionary sequence. Studying a species that shows social plasticity, that is facultatively social, would further allow disentangling the cause and consequence of social evolution and sensory systems and the implication of plasticity in the process.

Boulton and Field (2022) studied a species of sweat bee that shows social plasticity, Halictus rubicundus. They studied populations at different latitudes in Great Britain: populations in the North are solitary, while populations in the south often show sociality, as they face a longer and warmer growing season, leading to the opportunity for two generations in a single year, a pre-condition for the presence of workers provisioning for the (second) brood. Using scanning electron microscope imaging, the authors compared the density of antennal sensilla types in these different populations (north, mid-latitude, south) to test for an association between sociality and olfactory perception capacities. They counted three distinct types of antennal sensilla: olfactory plates, olfactory hairs, and thermos/hygro-receptive pores, used to detect humidity, temperature and CO2. In addition, they took advantage of facultative sociality in this species by transplanting individuals from a northern population (solitary) to a southern location (where conditions favour sociality), to study how social plasticity is reflected (or not) in the density of antennal sensilla types. They tested the prediction that olfactory sensilla density is also developmentally plastic in this species.

Their results show that antennal sensilla counts differ between the 3 studied regions (north, mid-latitude, south), but not as predicted. Individuals in the southern population were not significantly different from the mid-latitude and northern ones in their count of olfactory plates and they had less, not more, thermos/hygro receptors than mid-latitude and northern individuals. Furthermore, mid-latitude individuals had more olfactory hairs than the ones from the northern population and did not differ from southern ones. The prediction was that the individuals expressing sociality would have the highest count of these olfactory hairs. This unpredicted pattern based on the latitude of sampling sites may be due to the effect of temperature during development, which was higher in the mid-latitude site than in the southern one. It could also be the result of a genotype-by-environment interaction, where the mid-latitude population has a different developmental response to temperature compared to the other populations, a difference that is genetically determined (a different “reaction norm”). Reciprocal transplant experiments coupled with temperature measurements directly on site would provide interesting information to help further dissect this intriguing pattern. 

Interestingly, where a sweat bee developed had a significant effect on their antennal sensilla counts: individuals originating from the North that developed in the south after transplantation had significantly more olfactory hairs on their antenna than individuals from the same Northern population that developed in the North. This is in accordance with the prediction that the characteristics of sensory organs can also be plastic. However, there was no difference in antennal characteristics depending on whether these transplanted bees became solitary or expressed the social phenotype (foundress or worker). This result further supports the hypothesis that temperature affects development in this species and that these sensory characteristics are also plastic, although independently of sociality. Overall, the work of Boulton and Field underscores the importance of including phenotypic plasticity in the study of the evolution of social behaviour and provides a robust and fruitful model system to explore this further.

References

Boulton RA, Field J (2022) Sensory plasticity in a socially plastic bee. bioRxiv, 2022.01.29.478030, ver. 4 peer-reviewed and recommended by Peer Community in Evolutionary Biology. https://doi.org/10.1101/2022.01.29.478030

Sensory plasticity in a socially plastic beeRebecca A Boulton, Jeremy Field<p style="text-align: justify;">The social Hymenoptera have contributed much to our understanding of the evolution of sensory systems. Attention has focussed chiefly on how sociality and sensory systems have evolved together. In the Hymenoptera, t...Behavior & Social Evolution, Evolutionary Ecology, Phenotypic PlasticityNadia Aubin-Horth2022-02-02 11:34:49 View
31 Oct 2022
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Genotypic sex shapes maternal care in the African Pygmy mouse, Mus minutoides

Effect of sex chromosomes on mammalian behaviour: a case study in pygmy mice

Recommended by and ORCID_LOGO based on reviews by Marion Anne-Lise Picard, Caroline Hu and 1 anonymous reviewer

In mammals, it is well documented that sexual dimorphism and in particular sex differences in behaviour are fine-tuned by gonadal hormonal profiles. For example, in lemurs, where female social dominance is common, the level of testosterone in females is unusually high compared to that of other primate females (Petty and Drea 2015). 

Recent studies however suggest that gonadal hormones might not be the only biological factor involved in establishing sexual dimorphism, sex chromosomes might also play a role. The four core genotype (FCG) model and other similar systems allowing to decouple phenotypic and genotypic sex in mice have provided very convincing evidence of such a role (Gatewood et al. 2006; Arnold and Chen 2009; Arnold 2020a, 2020b). This however is a new field of research and the role of sex chromosomes in establishing sexually dimorphic behaviours has not been studied very much yet. Moreover, the FCG model has some limits. Sry, the male determinant gene on the mammalian Y chromosome might be involved in some sex differences in neuroanatomy, but Sry is always associated with maleness in the FCG model, and this potential role of Sry cannot be studied using this system.

Heitzmann et al. have used a natural system to approach these questions. They worked on the African Pygmy mouse, Mus minutoides, in which a modified X chromosome called X* can feminize X*Y individuals, which offers a great opportunity for elegant experiments on the effects of sex chromosomes versus hormones on behaviour. They focused on maternal care and compared pup retrieval, nest quality, and mother-pup interactions in XX, X*X and X*Y females. They found that X*Y females are significantly better at retrieving pups than other females. They are also much more aggressive towards the fathers than other females, preventing paternal care. They build nests of poorer quality but have similar interactions with pups compared to other females. Importantly, no significant differences were found between XX and X*X females for these traits, which points to an effect of the Y chromosome in explaining the differences between X*Y and other females (XX, X*X). Also, another work from the same group showed similar gonadal hormone levels in all the females (Veyrunes et al. 2022). 

Heitzmann et al. made a number of predictions based on what is known about the neuroanatomy of rodents which might explain such behaviours. Using cytology, they looked for differences in neuron numbers in the hypothalamus involved in the oxytocin, vasopressin and dopaminergic pathways in XX, X*X and X*Y females, but could not find any significant effects. However, this part of their work relied on very small sample sizes and they used virgin females instead of mothers for ethical reasons, which greatly limited the analysis. 

Interestingly, X*Y females have a higher reproductive performance than XX and X*X ones, which compensate for the cost of producing unviable YY embryos and certainly contribute to maintaining a high frequency of X* in many African pygmy mice populations (Saunders et al. 2014, 2022). X*Y females are probably solitary mothers contrary to other females, and Heitzmann et al. have uncovered a divergent female strategy in this species. Their work points out the role of sex chromosomes in establishing sex differences in behaviours. 

References

Arnold AP (2020a) Sexual differentiation of brain and other tissues: Five questions for the next 50 years. Hormones and Behavior, 120, 104691. https://doi.org/10.1016/j.yhbeh.2020.104691

Arnold AP (2020b) Four Core Genotypes and XY* mouse models: Update on impact on SABV research. Neuroscience & Biobehavioral Reviews, 119, 1–8. https://doi.org/10.1016/j.neubiorev.2020.09.021

Arnold AP, Chen X (2009) What does the “four core genotypes” mouse model tell us about sex differences in the brain and other tissues? Frontiers in Neuroendocrinology, 30, 1–9. https://doi.org/10.1016/j.yfrne.2008.11.001

Gatewood JD, Wills A, Shetty S, Xu J, Arnold AP, Burgoyne PS, Rissman EF (2006) Sex Chromosome Complement and Gonadal Sex Influence Aggressive and Parental Behaviors in Mice. Journal of Neuroscience, 26, 2335–2342. https://doi.org/10.1523/JNEUROSCI.3743-05.2006

Heitzmann LD, Challe M, Perez J, Castell L, Galibert E, Martin A, Valjent E, Veyrunes F (2022) Genotypic sex shapes maternal care in the African Pygmy mouse, Mus minutoides. bioRxiv, 2022.04.05.487174, ver. 4 peer-reviewed and recommended by Peer Community in Evolutionary Biology. https://doi.org/10.1101/2022.04.05.487174

Petty JMA, Drea CM (2015) Female rule in lemurs is ancestral and hormonally mediated. Scientific Reports, 5, 9631. https://doi.org/10.1038/srep09631

Saunders PA, Perez J, Rahmoun M, Ronce O, Crochet P-A, Veyrunes F (2014) Xy Females Do Better Than the Xx in the African Pygmy Mouse, Mus Minutoides. Evolution, 68, 2119–2127. https://doi.org/10.1111/evo.12387

Saunders PA, Perez J, Ronce O, Veyrunes F (2022) Multiple sex chromosome drivers in a mammal with three sex chromosomes. Current Biology, 32, 2001-2010.e3. https://doi.org/10.1016/j.cub.2022.03.029

Veyrunes F, Perez J, Heitzmann L, Saunders PA, Givalois L (2022) Separating the effects of sex hormones and sex chromosomes on behavior in the African pygmy mouse Mus minutoides, a species with XY female sex reversal. bioRxiv, 2022.07.11.499546. https://doi.org/10.1101/2022.07.11.499546

Genotypic sex shapes maternal care in the African Pygmy mouse, Mus minutoidesLouise D Heitzmann, Marie Challe, Julie Perez, Laia Castell, Evelyne Galibert, Agnes Martin, Emmanuel Valjent, Frederic Veyrunes<p>Sexually dimorphic behaviours, such as parental care, have long been thought to be driven mostly, if not exclusively, by gonadal hormones. In the past two decades, a few studies have challenged this view, highlighting the direct influence of th...Behavior & Social Evolution, Evolutionary Ecology, Reproduction and SexGabriel Marais2022-04-08 20:09:58 View
28 Feb 2018
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Insects and incest: sib-mating tolerance in natural populations of a parasitoid wasp

Incestuous insects in nature despite occasional fitness costs

Recommended by and based on reviews by 2 anonymous reviewers

Inbreeding, or mating between relatives, generally lowers fitness [1]. Mating between genetically similar individuals can result in higher levels of homozygosity and consequently a higher frequency with which recessive disease alleles may be expressed within a population. Reduced fitness as a consequence of inbreeding, or inbreeding depression, can vary between individuals, sexes, populations and species [2], but remains a pervasive challenge for many organisms with small local population sizes, including humans [3]. But all is not lost for individuals within small populations, because an array of mechanisms can be employed to evade the negative effects of inbreeding [4], including sib-mating avoidance and dispersal [5, 6].

Despite thorough investigation of inbreeding and sib-mating avoidance in the laboratory, only very few studies have ventured into the field besides studies on vertebrates and eusocial insects. The study of Collet et al. [7] is a surprising exception, where the effect of male density and frequency of relatives on inbreeding avoidance was tested in the laboratory, after which robust field collections and microsatellite genotyping were used to infer relatedness and dispersal in natural populations. The parasitic wasp Venturia canescens is an excellent model system to study inbreeding, because mating success was previously found to decrease with increasing relatedness between mates in the laboratory [8] and this species thus suffers from inbreeding depression [9–11]. The authors used an elegant design combining population genetics and model simulations to estimate relatedness of mating partners in the field and compared that with a theoretical distribution of potential mate encounters when random mating is assumed. One of the most important findings of this study is that mating between siblings is not avoided in this species in the wild, despite negative fitness effects when inbreeding does occur. Similar findings were obtained for another insect species, the field cricket Gryllus campestris [12], which leaves us to wonder whether inbreeding tolerance could be more common in nature than currently appreciated.

The authors further looked into sex-specific dispersal patterns between two patches located a few hundred meters apart. Females were indeed shown to be more related within a patch, but no genetic differences were observed between males, suggesting that V. canescens males more readily disperse. Moreover, microsatellite data at 18 different loci did not reveal genetic differentiation between populations approximately 300 kilometers apart. Gene flow is thus occurring over considerable distances, which could play an important role in the ability of this species to avoid negative fitness consequences of inbreeding in nature.

Another interesting aspect of this work is that discrepancies were found between laboratory- and field-based data. What is the relevance of laboratory-based experiments if they cannot predict what is happening in the wild? Many, if not most, biologists (including us) bring our model system into the laboratory to control, at least to some extent, the plethora of environmental factors that could potentially affect our system (in ways that we do not want). Most behavioral studies on mating patterns and sexual selection are conducted in standardized laboratory conditions, but sexual selection is in essence social selection, because an individual’s fitness is partly determined by the phenotype of its social partners (i.e. the social environment) [13]. The social environment may actually dictate the expression of female mate choice and it is unclear how potential laboratory-induced social biases affect mating outcome. In V. canescens, findings using field-caught individuals paint a completely opposite picture of what was previously shown in the laboratory, i.e. sib-avoidance is not taking place in the field. It is likely that density, level of relatedness, sex ratio in the field, and/or the size of experimental arenas in the lab are all factors affecting mate selectivity, as we have previously shown in a butterfly [14–16]. If females, for example, typically only encounter a few males in sequence in the wild, it may be problematic for them to express choosiness when confronted simultaneously with two or more males in the laboratory. A recent study showed that, in the wild, female moths take advantage of staying in groups to blur male choosiness [17]. It is becoming more and more clear that what we observe in the laboratory may not actually reflect what is happening in nature [18]. Instead of ignoring the species-specific life history and ecological features of our favorite species when conducting lab experiments, we suggest that it is time to accept that we now have the theoretical foundations to tease apart what in this “environmental noise” actually shapes sexual selection in nature. Explicitly including ecology in studies on sexual selection will allow us to make more meaningful conclusions, i.e. rather than “this is what may happen in the wild”, we would be able to state “this is what often happens in nature”.

References

[1] Charlesworth D & Willis JH. 2009. The genetics of inbreeding depression. Nat. Rev. Genet. 10: 783–796. doi: 10.1038/nrg2664
[2] Hedrick PW & Garcia-dorado A. 2016. Understanding inbreeding depression, purging, and genetic rescue. Trends Ecol. Evol. 31: 940–952. doi: 10.1016/j.tree.2016.09.005
[3] Bittles AH & Black ML. 2010. Consanguinity, human evolution, and complex diseases. Proc. Natl. Acad. Sci. United States Am. 107: 1779–1786. doi: 10.1073/pnas.0906079106
[4] Pusey A & Wolf M. 1996. Inbreeding avoidance in animals. Trends Ecol. Evol. 11: 201–206. doi: 10.1016/0169-5347(96)10028-8
[5] Greenwood PJ & Harvey PH. 1978. Inbreeding and dispersal in the great tit. Nature 271: 52–54. doi: 10.1038/271052a0
[6] Szulkin M & Sheldon BC. 2008. Dispersal as a means of inbreeding avoidance in a wild bird population. Proc. R. Soc. B 275: 703–711. doi: 10.1098/rspb.2007.0989
[7] Collet M, Amat I, Sauzet S, Auguste A, Fauvergue X, Mouton L, Desouhant E. 2018. Insects and incest: sib-mating tolerance in natural populations of a parasitoid wasp. bioRxiv 169268, ver. 4 peer-reviewed by Peer Community In Evolutionary Biology. doi: 10.1101/169268
[8] Metzger M, Bernstein C, Hoffmeister TS & Desouhant E. 2010. Does kin recognition and sib-mating avoidance limit the risk of genetic incompatibility in a parasitic wasp ? PLoS One 5: e13505. doi: 10.1371/journal.pone.0013505
[9] Beukeboom LW. 2001. Single-locus complementary sex determination in the Ichneumonid Venturia canescens. Netherlands J. Zool. 51: 1–15. doi: 10.1163/156854201X00017
[10] Vayssade C, de Fazio C, Quaglietti B, Auguste A, Ris N, Fauvergue X. 2014. Inbreeding depression in a parasitoid wasp with single- locus complementary sex determination. PLoS One 9: 1–8. doi: 10.1371/journal.pone.0097733
[11] Chuine A, Sauzet S, Debias F & Desouhant E. 2015. Consequences of genetic incompatibility on fitness and mate choice: the male point of view. Biol. J. Linn. Soc. 114: 279–286. doi: 10.1111/bij.12421
[12] Bretman A, Rodri R & Tregenza T. 2011. Fine-scale population structure , inbreeding risk and avoidance in a wild insect population. Mol. Ecol. 20: 3045–3055. doi: 10.1111/j.1365-294X.2011.05140.x
[13] West-Eberhard MJ. 2014. Darwin’s forgotten idea: The social essence of sexual selection. Neurosci. Biobehav. Rev. 46: 501–508. doi: 10.1016/j.neubiorev.2014.06.015
[14] Holveck M-J, Gauthier A-L & Nieberding CM 2015. Dense, small and male-biased cages exacerbate male-male competition and reduce female choosiness in Bicyclus anynana. Anim. Behav. 104: 229–245. doi: 10.1016/j.anbehav.2015.03.025
[15] Nieberding, CM & Holveck M-J 2017. Laboratory social environment biases mating outcome: a first quantitative synthesis in a butterfly. Behav. Ecol. Sociobiol. 71: 117. doi: 10.1007/s00265-017-2346-9
[16] Nieberding CM & Holveck M-J. (In prep). Comentary on Kehl et al. 2018: "Young male mating success is associated with sperm number but not with male sex pheromone titres". Front. Ecol. Evol.
[17] Wijk M Van, Heath J, Lievers R, Schal C & Groot AT. 2017. Proximity of signallers can maintain sexual signal variation under stabilizing selection. Sci. Rep. 7: 18101. doi: 10.1038/s41598-017-17327-9
[18] Miller CW & Svensson EI. 2014. Sexual selection in complex environments. Annu. Rev. Entomol. 59: 427–445. doi: 10.1146/annurev-ento-011613-162044

Insects and incest: sib-mating tolerance in natural populations of a parasitoid waspMarie Collet, Isabelle Amat, Sandrine Sauzet, Alexandra Auguste, Xavier Fauvergue, Laurence Mouton, Emmanuel Desouhant<p>This preprint has been reviewed and recommended by Peer Community In Evolutionary Biology (http://dx.doi.org/10.24072/pci.evolbiol.100047) 1. Sib-mating avoidance is a pervasive behaviour that likely evolves in species subject to inbreeding dep...Behavior & Social Evolution, Evolutionary Ecology, Sexual SelectionCaroline Nieberding2017-07-28 09:23:20 View
12 Jul 2017
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Despite reproductive interference, the net outcome of reproductive interactions among spider mite species is not necessarily costly

The pros and cons of mating with strangers

Recommended by based on reviews by Joël Meunier and Michael D Greenfield

 

Interspecific matings are by definition rare events in nature, but when they occur they can be very important, and not only because they might condition gene flow between species. Even when such matings have no genetic consequence, for instance if they do not yield any fertile hybrid offspring, they can still have an impact on the population dynamics of the species involved [1]. Such atypical pairings between heterospecific partners are usually regarded as detrimental or undesired; as they interfere with the occurrence or success of intraspecific matings, they are expected to cause a decline in absolute fitness.
The story is not always so simple however, and it might all depend on the timing of events and on the identity of the partners. Using the herbivorous mite Tetranychus urticae as a model, Clemente et al. [2] experimentally arranged matings with two other Tetranychus species that commonly share the same host plants as T. urticae. They carefully controlled the history of events: heterospecific matings could occur just before, just after, 24h before, or 24h after, a conspecific mating. Interestingly, the oviposition rate (total fecundity) of females was increased when mating with a heterospecific individual. This suggests that heterospecic sperm can stimulate oogenesis just as conspecific sperm does. Such a positive effect was observed for matings involving T. ludeni females and T. urticae males, but a negative effect is found in the interaction with T. evansi. Sex-ratio (fertilization success in those species) could also be impacted but, unlike fertilization, this occurred when the mating events were distant in time. This is is at odds with what is observed in conspecific matings, where sperm displacement occurs only if mating events are temporally close. Overall, the effects of heterospecific mating were quite variable and it is challenging to predict a single, general, effect of interspecific matings. The net effect will likely be context-dependent, depending on the relative frequency of the difference mating sequences and on how fecundity and sex-ratio contribute to overall fitness, both aspect strongly influenced by the population dynamics and structure.

References

[1] Gröning J. & Hochkirch A. 2008. Reproductive interference between animal species. The Quarterly Review of Biology 83: 257-282. doi: 10.1086/590510

[2] Clemente SH, Santos I, Ponce AR, Rodrigues LR, Varela SAM & Magalhaes S. 2017 Despite reproductive interference, the net outcome of reproductive interactions among spider mite species is not necessarily costly. bioRxiv 113274, ver. 4 of the 30th of June 2017. doi: 10.1101/113274

Despite reproductive interference, the net outcome of reproductive interactions among spider mite species is not necessarily costlySalomé H. Clemente, Inês Santos, Rita Ponce, Leonor R. Rodrigues, Susana A. M. Varela and Sara MagalhãesReproductive interference is considered a strong ecological force, potentially leading to species exclusion. This supposes that the net effect of reproductive interactions is strongly negative for one of the species involved. Testing this requires...Behavior & Social Evolution, Evolutionary Ecology, Species interactionsVincent Calcagno2017-03-06 11:48:08 View
16 Dec 2016
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Evolutionary robotics simulations help explain why reciprocity is rare in nature.

Simulated robots and the evolution of reciprocity

Recommended by and ORCID_LOGO

Of the various forms of cooperative and altruistic behavior, reciprocity remains the most contentious. Humans certainly exhibit reciprocity – under certain circumstances – and various non-human animals behave in ways suggesting that they do as well. Thus, evolutionary biologists have sought to explain why non-relatives might engage in altruistic transactions when a substantial delay occurs between helping and compensation; i.e. an individual may be a donor today and a beneficiary tomorrow, or vice-versa. This quest, aided by game theory and computer modeling late in the past century, identified some strategies for reciprocal behavior that could work – in theory. But when biologists looked for confirmation of these strategies in animals they found little evidence that stood up to rigorous testing. In a recent paper André and Nolfi [1] offer a compelling reason for this observed rarity of reciprocity: Reciprocal behavior that animals might exhibit is a bit more complex than any of the game theoretic strategies, and even the simplest forms of realistic behavior would entail several nearly simultaneous mutations, an unlikely occurrence. André and Nolfi [1] relied on neural networks to test actors, robots that could evolve helping and reciprocal behavior from a basal level of selfishness. In an extensive series of simulations, they found that reciprocal behavior did not take hold in a population, largely because the various intermediates to full reciprocity were eliminated before the subsequent mutations occurred. The findings are satisfying given our current knowledge of animal behavior, but questions remain. Notably, how does one account for those rare cases in which reciprocity does meet all the criteria? The authors suggest some possibilities, but an analysis will await their next study.

Reference

[1] André J-B, Nolfi S. 2016. Evolutionary robotics simulations help explain why reciprocity is rare in nature. Scientific Reports 6:32785. doi: 10.1038/srep32785

Evolutionary robotics simulations help explain why reciprocity is rare in nature.André J-B, Nolfi S<p>The relative rarity of reciprocity in nature, contrary to theoretical predictions that it should be widespread, is currently one of the major puzzles in social evolution theory. Here we use evolutionary robotics to solve this puzzle. We show th...Behavior & Social Evolution, Evolutionary TheoryMichael D Greenfield2016-12-16 18:08:31 View
13 Jan 2019
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Why cooperation is not running away

A nice twist on partner choice theory

Recommended by based on reviews by 2 anonymous reviewers

In this paper, Geoffroy et al. [1] deal with partner choice as a mechanism of maintaining cooperation, and argues that rather than being unequivocally a force towards improved payoffs to everyone through cooperation, partner choice can lead to “over-cooperation” where individuals can evolve to invest so much in cooperation that the costs of cooperating partially or fully negate the benefits from it. This happens when partner choice is consequential and effective, i.e., when interactions are long (so each decision to accept or reject a partner is a bigger stake) and when meeting new partners is frequent when unpaired (so that when one leaves an interaction one can find a new partner quickly). Geoffroy et al. [1] show that this tendency to select for overcooperation under such regimes can be counteracted if individuals base their acceptance-rejection of partners not just on the partner cooperativeness, but also on their own. By using tools from matching theory in economics, they show that plastic partner choice generates positive assortment between cooperativeness of the partners, and in the extreme case of perfectly assortative pairings, makes the pair the unit of selection, which selects for maximum total payoff.
This study is a nice contribution to the literature that illustrates potential complexities with partner choice as a mechanism for cooperation, including how the proximate mechanisms of partner choice can significantly alter the evolutionary trajectory of cooperation. Modeling choice as a reaction norm that depends on one’s own traits also adds a layer of realism to partner choice theory.
The authors are also to be commended for the revisions they made through the review process. Earlier versions of the model somewhat overstated the tendency for fixed partner choice strategies to lead to over cooperation, missing some of the important features in previous models, notably McNamara et al. [2] that can counter this tendency. In this version, the authors acknowledge these factors, mainly, mortality during partner choice (which increases the opportunity cost of forgoing a current partner) and also the fact that endogenous distribution of alternative partners (which will tend to be worse than the overall population distribution, because more cooperative types spend more time attached and less cooperative types more time unattached). These two factors can constrain cooperation from “running away” as the authors put it, but the main point of Geoffroy et al. [1] that plastic choice can create selection against inefficient cooperation stands.
I think the paper will be very stimulating to theoretical and empirical researchers working on partner choice and social behaviors, and happy to recommend it.

References

[1] Geoffroy, F., Baumard, N., & Andre, J.-B. (2019). Why cooperation is not running away. bioRxiv, ver. 5 peer-reviewed and recommended by PCI Evol Biol. doi: 10.1101/316117
[2] McNamara, J. M., Barta, Z., Fromhage, L., & Houston, A. I. (2008). The coevolution of choosiness and cooperation. Nature, 451, 189–192. doi: 10.1038/nature06455

Why cooperation is not running awayFélix Geoffroy, Nicolas Baumard, Jean-Baptiste André<p>A growing number of experimental and theoretical studies show the importance of partner choice as a mechanism to promote the evolution of cooperation, especially in humans. In this paper, we focus on the question of the precise quantitative lev...Behavior & Social Evolution, Evolutionary TheoryErol Akcay2018-05-15 10:32:51 View
05 Feb 2021
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Relaxation of purifying selection suggests low effective population size in eusocial Hymenoptera and solitary pollinating bees

Multi-gene and lineage comparative assessment of the strength of selection in Hymenoptera

Recommended by based on reviews by Michael Lattorff and 1 anonymous reviewer

Genetic variation is the raw material for selection to act upon and the amount of genetic variation present within a population is a pivotal determinant of a population’s evolutionary potential. A large effective population size, i.e., the ideal number of individuals experiencing the same amount of genetic drift and inbreeding as an actual population, Ne (Wright 1931, Crow 1954), thus increases the probability of long-term survival of a population. However, natural populations, as opposed to theoretical ones, rarely adhere to the requirements of an ideal panmictic population (Sjödin et al. 2005). A range of circumstances can reduce Ne, including the structuring of populations (through space and time, as well as age and developmental stages) and inbreeding (Charlesworth 2009). In mammals, species with a larger body mass (as a proxy for lower Ne) were found to have a higher rate of nonsynonymous nucleotide substitutions (that alter the amino acid sequence of a protein), as well as radical amino acid substitutions (altering the physicochemical properties of a protein) (Popadin et al. 2007). In general, low effective population sizes increase the chance of mutation accumulation and drift, while reducing the strength of selection (Sjödin et al. 2005).
In this paper, Weyna and Romiguier (2021) set out to test if parasitism, body size, geographic range, and/or eusociality affect the strength of selection in Hymenoptera. Hymenoptera include the bees, wasps and ants and is an extraordinarily diverse order within the insects. It was recently estimated that Hymenoptera is the most speciose order of the animal kingdom (Forbes et al. 2018). Hymenoptera are further characterized by an impressive radiation of parasitic species, mainly parasitoids, that feed in or on a single host individual to complete their own development (Godfray 1994). All hymenopterans share the same sex determination system: haplo-diploidy, where unfertilized eggs are haploid males and fertilized eggs are diploid females. Compared to other animals, Hymenoptera further contain an impressive number of clades that evolved eusociality (Rehan and Toth 2015), in which societies show a clear division of labor for reproduction (i.e., castes) and cooperative brood care. Hymenopterans thus represent a diverse and interesting group of insects to investigate potential factors affecting strength of selection and Ne.
Using a previously published phylogenomic dataset containing 3256 genes and 169 hymenopteran species (Peters et al. 2017), Weyna and Romiguier (2021) estimated mean genomic dN/dS ratios (nonsynonymous to synonymous substitution rates) for each species and compared these values between parasitic and non-parasitic species, eusocial and solitary species, and in relation to body size, parasitoid-specific traits and geographic range, thought to affect the effective population size and strength of selection. The use of a large number of species, as well as several distinct traits is a clear asset of this study. The authors found no effect of body size, geographic range or parasitism (including a range of parasitoid-specific traits). There was an effect, however, of eusociality where dN/dS increased in three out of four eusocial lineages. Future studies including more independent evolutionary transitions to eusociality can lend further support that eusocial species indeed reduces the efficiency of selection. The most intriguing result was that for solitary and social bees, with high dN/dS ratios and a strong signature of relaxed selection (i.e., the elimination or reduction of a source of selection (Lahti et al. 2009). The authors suggest that the pollen-collecting behaviors of these species can constrain Ne, as pollen availability varies at both a spatial and temporal scale, requiring a large investment in foraging that may in turn limit reproductive output. It would be interesting to see if other pollen feeders, such as certain beetles, flies, butterflies and moths, as well as mites and spiders, experience relaxed selection as a consequence of the trade-off between energy investment in pollen foraging versus fecundity.

References

Charlesworth, B. (2009). Effective population size and patterns of molecular evolution and variation. Nature Reviews Genetics, 10(3), 195-205. doi: https://doi.org/10.1038/nrg2526
Crow, J. F. (1954) Statistics and Mathematics in Biology (eds Kempthorne, O., Bancroft, T. A., Gowen, J. W. & Lush, J. L.) 543–556 (Iowa State Univ. Press, Ames, Iowa)
Forbes, A. A., Bagley, R. K., Beer, M. A., Hippee, A. C., and Widmayer, H. A. (2018). Quantifying the unquantifiable: why Hymenoptera, not Coleoptera, is the most speciose animal order. BMC ecology, 18(1), 1-11. doi: https://doi.org/10.1186/s12898-018-0176-x
Godfray, H. C. J. (1994) Parasitoids: Behavioral and Evolutionary Ecology. Vol. 67, Princeton University Press, 1994. doi: https://doi.org/10.2307/j.ctvs32rmp
Lahti et al. (2009). Relaxed selection in the wild. Trends in ecology & evolution, 24(9), 487-496. doi: https://doi.org/10.1016/j.tree.2009.03.010
Peters et al. (2017). Evolutionary history of the Hymenoptera. Current Biology, 27(7), 1013-1018. doi: https://doi.org/10.1016/j.cub.2017.01.027
Popadin, K., Polishchuk, L. V., Mamirova, L., Knorre, D., and Gunbin, K. (2007). Accumulation of slightly deleterious mutations in mitochondrial protein-coding genes of large versus small mammals. Proceedings of the National Academy of Sciences, 104(33), 13390-13395. doi: https://doi.org/10.1073/pnas.0701256104
Rehan, S. M., and Toth, A. L. (2015). Climbing the social ladder: the molecular evolution of sociality. Trends in ecology & evolution, 30(7), 426-433. doi: https://doi.org/10.1016/j.tree.2015.05.004
Sjödin, P., Kaj, I., Krone, S., Lascoux, M., and Nordborg, M. (2005). On the meaning and existence of an effective population size. Genetics, 169(2), 1061-1070. doi: https://doi.org/10.1534/genetics.104.026799
Weyna, A., and Romiguier, J. (2021) Relaxation of purifying selection suggests low effective population size in eusocial Hymenoptera and solitary pollinating bees. bioRxiv, 2020.04.14.038893, ver. 5 peer-reviewed and recommended by PCI Evol Biol. doi: https://doi.org/10.1101/2020.04.14.038893
Wright, S. (1931). Evolution in Mendelian populations. Genetics, 16(2), 97-159.

Relaxation of purifying selection suggests low effective population size in eusocial Hymenoptera and solitary pollinating beesArthur Weyna, Jonathan Romiguier<p>With one of the highest number of parasitic, eusocial and pollinator species among all insect orders, Hymenoptera features a great diversity of lifestyles. At the population genetic level, such life-history strategies are expected to decrease e...Behavior & Social Evolution, Genome Evolution, Life History, Molecular Evolution, Population Genetics / GenomicsBertanne Visser2020-04-21 17:30:57 View
26 Nov 2019
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Pleiotropy or linkage? Their relative contributions to the genetic correlation of quantitative traits and detection by multi-trait GWA studies

Understanding the effects of linkage and pleiotropy on evolutionary adaptation

Recommended by based on reviews by Pär Ingvarsson and 1 anonymous reviewer

Genetic correlations among traits are ubiquitous in nature. However, we still have a limited understanding of the genetic architecture of trait correlations. Some genetic correlations among traits arise because of pleiotropy - single mutations or genotypes that have effects on multiple traits. Other genetic correlations among traits arise because of linkage among mutations that have independent effects on different traits. Teasing apart the differential effects of pleiotropy and linkage on trait correlations is difficult, because they result in very similar genetic patterns. However, understanding these differential effects gives important insights into how ubiquitous pleiotropy may be in nature.
In the preprint "Pleiotropy or linkage? Their relative contributions to the genetic correlation of quantitative traits and detection by multi-trait GWA studies", Chebib and Guillaume [1] explore the conditions under which trait correlations caused by pleiotropy result in similar and different genetic patterns than trait correlations caused by linkage. Their main finding is that pleiotropic architectures result in higher trait correlations than do architectures in which completely linked mutations affect different traits. This results clarifies and goes against a previous theoretical study that predicted that pleiotropic architectures could not be distinguished from completely linked mutations that affect independent traits.
In genome-wide association studies (GWAS), it is difficult to know if a significant signal is a causal variant that truly affects the trait, a false positive neutral variant linked to a causal variant, or a false positive causal variant that affects a different trait but is significant because of trait correlations. In their study, Chebib and Guillaume [1] show that this latter category can be a common source of false positives in GWAS studies when mutations affecting different traits are linked. One of the main limitation of this aspect of their analysis is the lack of simulation of neutral loci, which would likely show even higher rates of false positives than reported in their study.
The main limitation in their study is the restrictive assumptions about the genetic architectures (e.g. all pairs of loci have a fixed recombination rate among them). In reality, new causal mutations that arise near another causal mutation may have higher or lower establishment probabilities depending on the direction of effects on the trait and the parameters for selection and demography. Their study still deserves a recommendation, however, because of the new insights it gives into the genetic architecture of trait correlations.

References

[1] Chebib, J. and Guillaume, F. (2019). Pleiotropy or linkage? Their relative contributions to the genetic correlation of quantitative traits and detection by multi-trait GWA studies. bioRxiv, 656413, v3 peer-reviewed and recommended by PCI Evolutionary Biology. doi: 10.1101/656413

Pleiotropy or linkage? Their relative contributions to the genetic correlation of quantitative traits and detection by multi-trait GWA studiesJobran Chebib and Frédéric Guillaume<p>Genetic correlations between traits may cause correlated responses to selection depending on the source of those genetic dependencies. Previous models described the conditions under which genetic correlations were expected to be maintained. Sel...Bioinformatics & Computational Biology, Evolutionary Applications, Evolutionary Dynamics, Evolutionary Theory, Genome Evolution, Genotype-Phenotype, Molecular Evolution, Population Genetics / Genomics, Quantitative GeneticsKathleen Lotterhos2019-06-05 13:51:43 View
17 Dec 2016
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POSTPRINT

Evolution of HIV virulence in response to widespread scale up of antiretroviral therapy: a modeling study

Predicting HIV virulence evolution in response to widespread treatment

Recommended by ORCID_LOGO and

It is a classical result in the virulence evolution literature that treatments decreasing parasite replication within the host should select for higher replication rates, thus driving increased levels of virulence if the two are correlated. There is some evidence for this in vitro but very little in the field. HIV infections in humans offer a unique opportunity to go beyond the simple predictions that treatments should favour more virulent strains because many details of this host-parasite system are known, especially the link between set-point virus load, transmission rate and virulence.

To tackle this question, Herbeck et al. [1] used a detailed individual-based model. This is original because it allows them to integrate existing knowledge from the epidemiology and evolution of HIV (e.g. recent estimates of the ‘heritability’ of set-point virus load from one infection to the next). This detailed model allows them to formulate predictions regarding the effect of different treatment policies; especially regarding the current policy switch away from treatment initiation based on CD4 counts towards universal treatment.

The results show that, perhaps as expected from the theory, treatments based on the level of remaining host target cells (CD4 T cells) do not affect virulence evolution because they do not strongly affect the virulence level that maximizes HIV’s transmission potential. However, early treatments can lead to moderate increase in virulence within several years if coverage is high enough. These results seem quite robust to variation of all the parameters in realistic ranges.

The great step forward in this model is the ability to obtain quantitative prediction regarding how a virus may evolve in response to public health policies. Here the main conclusion is that given our current knowledge in HIV biology, the risk of virulence evolution is perhaps more limited than expected from a direct application of virulence evolution model. Interestingly, the authors also conclude that recently observed increased in HIV virulence [2-3] cannot be explained by the impact of antiretroviral therapy alone; which raises the question about the main mechanism behind this increase. Finally, the authors make the interesting suggestion that “changing virulence is amenable to being monitored alongside transmitted drug resistance in sentinel surveillance”.

References

[1] Herbeck JT, Mittler JE, Gottlieb GS, Goodreau SM, Murphy JT, Cori A, Pickles M, Fraser C. 2016. Evolution of HIV virulence in response to widespread scale up of antiretroviral therapy: a modeling study. Virus Evolution 2:vew028. doi: 10.1093/ve/vew028

[2] Herbeck JT, Müller V, Maust BS, Ledergerber B, Torti C, et al. 2012. Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission. AIDS 26:193-205. doi: 10.1097/QAD.0b013e32834db418

[3] Pantazis N, Porter K, Costagliola D, De Luca A, Ghosn J, et al. 2014. Temporal trends in prognostic markers of HIV-1 virulence and transmissibility: an observational cohort study. Lancet HIV 1:e119-26. doi: 10.1016/s2352-3018(14)00002-2

Evolution of HIV virulence in response to widespread scale up of antiretroviral therapy: a modeling studyHerbeck JT, Mittler JE, Gottlieb GS, Goodreau SM, Murphy JT, Cori A, Pickles M, Fraser C<p>There are global increases in the use of HIV antiretroviral therapy (ART), guided by clinical benefits of early ART initiation and the efficacy of treatment as prevention of transmission. Separately, it has been shown theoretically and empirica...Bioinformatics & Computational Biology, Evolutionary Applications, Evolutionary EpidemiologySamuel Alizon2016-12-16 20:54:08 View
21 Nov 2018
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Convergent evolution as an indicator for selection during acute HIV-1 infection

Is convergence an evidence for positive selection?

Recommended by based on reviews by Jeffrey Townsend and 1 anonymous reviewer

The preprint by Bertels et al. [1] reports an interesting application of the well-accepted idea that positively selected traits (here variants) can appear several times independently; think about the textbook examples of flight capacity. Hence, the authors assume that reciprocally convergence implies positive selection. The methodology becomes then, in principle, straightforward as one can simply count variants in independent datasets to detect convergent mutations.
In this preprint, the authors have applied this counting strategy on 95 available sequence alignments of the env gene of HIV-1 [2,3] that corresponds to samples taken in different patients during the early phase of infection, at the very beginning of the onset of the immune system. They have compared the number and nature of the convergent mutations to a "neutral" model that assumes (a) a uniform distribution of mutations and (b) a substitution matrix estimated from the data. They show that there is an excess of convergent mutations when compared to the “neutral” expectations, especially for mutations that have arisen in 4+ patients. They also show that the gp41 gene is enriched in these convergent mutations. The authors then discuss in length the potential artifacts that could have given rise to the observed pattern.
I think that this preprint is remarkable in the proposed methodology. Samples are taken in different individuals, whose viral populations were founded by a single particle. Thus, there is no need for phylogenetic reconstruction of ancestral states that is the typical first step of trait convergent analyses. It simply becomes counting variants. This simple counting procedure needs nonetheless to be compared to a “neutral” expectation (a reference model), which includes the mutational process. In this article, the poor predictions of a specifically designed reference model is interpreted as an evidence for positive selection.
Whether the few mutations that are convergent in 4-7 samples out of 95 were selected or not is hard to assess with certainty. The authors have provided good evidence that they are, but only experimental validations will strengthen the claim. Nonetheless, beyond a definitive clue to the implication of selection on these particular mutations, I found the methodological strategy and the discussions on the potential biases highly stimulating. This article is an excellent starting point for further methodological developments that could be then followed by large-scale analyses of convergence in many different organisms and case studies.

References

[1] Bertels, F., Metzner, K. J., & Regoes R. R. (2018). Convergent evolution as an indicator for selection during acute HIV-1 infection. BioRxiv, 168260, ver. 4 peer-reviewed and recommended by PCI Evol Biol. doi: 10.1101/168260
[2] Keele, B. F., Giorgi, E. E., Salazar-Gonzalez, J. F., Decker, J. M., Pham, K.T., Salazar, M. G., Sun, C., Grayson, T., Wang, S., Li, H. et al. (2008). Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection. Proc Natl Acad Sci USA 105: 7552–7557. doi: 10.1073/pnas.0802203105
[3] Li, H., Bar, K. J., Wang, S., Decker, J. M., Chen, Y., Sun, C., Salazar-Gonzalez, J.F., Salazar, M.G., Learn, G.H., Morgan, C. J. et al. (2010). High multiplicity infection by HIV-1 in men who have sex with men. PLoS Pathogens 6:e1000890. doi: 10.1371/journal.ppat.1000890

Convergent evolution as an indicator for selection during acute HIV-1 infectionFrederic Bertels, Karin J Metzner, Roland R Regoes<p>Convergent evolution describes the process of different populations acquiring similar phenotypes or genotypes. Complex organisms with large genomes only rarely and only under very strong selection converge to the same genotype. In contrast, ind...Bioinformatics & Computational Biology, Evolutionary Applications, Genome Evolution, Molecular EvolutionGuillaume Achaz2017-07-26 08:39:17 View